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An updated world checklist of velvet worms (Onychophora) with notes on nomenclature and status of names
(2023-11-16)
More than a decade has passed since the publication of the only world checklist available for Onychophora. During this period, numerous nomenclatural acts and taxonomic changes have been suggested within the group and a wealth of novel data has been published on many taxa. Herein, the up-to-date taxonomic scenario within Onychophora is presented, with appraisal of name status. This checklist covers both extant (Peripatidae and Peripatopsidae) and fossil taxa, and each species is accompanied by information on synonyms, ...
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Soil respiration under different N fertilization and irrigation regimes in Bengaluru, S-India
(2023-09-15)
Rapid urbanization in many countries of the Global South has led to intensification of urban and peri-urban agriculture (UPA) whose effects on the soils’ physical, chemical, and microbial properties have been hardly studied. We therefore investigated the effects of different intensity levels, exemplified by three rates of mineral nitrogen (N) addition and irrigation on CO₂ emissions in typical crops during the wet (Kharif) and dry (Rabi) season on a Nitisol in Bengaluru, S-India. Respiration data were collected from ...
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DPH1 Gene Mutations Identify a Candidate SAM Pocket in Radical Enzyme Dph1 Dph2 for Diphthamide Synthesis on EF2
(2023-11-16)
In eukaryotes, the Dph1•Dph2 dimer is a non-canonical radical SAM enzyme. Using iron-sulfur (FeS) clusters, it cleaves the cosubstrate S-adenosyl-methionine (SAM) to form a 3-amino-3-carboxy-propyl (ACP) radical for the synthesis of diphthamide. The latter decorates a histidine residue on elongation factor 2 (EF2) conserved from archaea to yeast and humans and is important for accurate mRNA translation and protein synthesis. Guided by evidence from archaeal orthologues, we searched for a putative SAM-binding pocket ...
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Yeast gene KTI13 (alias DPH8) operates in the initiation step of diphthamide synthesis on elongation factor 2
(2023-08-08)
In yeast, Elongator-dependent tRNA modifications are regulated by the Kti11•Kti13 dimer and hijacked for cell killing by zymocin, a tRNase ribotoxin. Kti11 (alias Dph3) also controls modification of elongation factor 2 (EF2) with diphthamide, the target for lethal ADP-ribosylation by diphtheria toxin (DT). Diphthamide formation on EF2 involves four biosynthetic steps encoded by the DPH1-DPH7 network and an ill-defined KTI13 function. On further examining the latter gene in yeast, we found that kti13Δ null-mutants ...
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A hitchhiker’s guide: estimates of microbial biomass and microbial gene abundance in soil
(2024-03-19)
Information on microbial biomass carbon (MBC) is crucial to assess their stocks and role for plant nutrient release in soil. Next to fumigation-extraction, molecular methods are routinely used to estimate the contribution of fungi, bacteria, and archaea to the soil microbial community. However, more information on the links between these different indices would deepen the understanding of microbial processes. The current study is based on 11 datasets, which contain MBC and MBN data obtained by fumigation-extraction ...
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Impact of Pea necrotic yellow dwarf virus (PNYDV) on nodulation, N₂ fixation and yield in faba bean (Vicia faba, L.)
(2022-08-09)
Pea necrotic yellow dwarf virus (PNYDV) is a novel nanovirus in Europe, affecting various grain legumes. The impact of PNYDV on nodulation, symbiotic N₂ fixation and yield parameters in faba bean (Vicia faba L.) was investigated at controlled conditions in the greenhouse (2017), on-farm in natural infection foci (2018, 2019) and in a small-scale field experiment (2020). In the latter, the standard variety ‘Fuego’ was compared with the variety ‘GL Sunrise’ in early and late infections. In addition, the analogous effects ...
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Why has animal science not led to improved farm animal health and welfare?
(2024-01-05)
To sustain the economic viability of a livestock farm in a global market, characterised by a price undercutting competition, farmers are forced to adapt to what the market demands. At the same time, they have to care for the functionality of the farm system as a whole and of the subsystems, such as the farm animals, so that they for their part they can contribute to an economic success. Now, that animal health and welfare (AHW) has become an increasingly important issue for citizens and consumers, not only the decision ...
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Didymella pinodella: An Important Pea Root Rot Pathogen in France to Watch Out For?
(2024-01-05)
Root rot pathogens restrict pea and wheat production globally. In the EU, pea and pea-based cereal mixtures are being promoted; however, root rot pathogen dynamics in such mixtures are poorly understood. Winter pea and wheat were grown either in pure stands or in mixtures in the field in western France, and the severity of root rot in pea, wheat, and their mixtures, as well as the key pathogens associated with these crops, were assessed. Disease severity was moderate in pea and low in wheat, with no effect of sowing ...
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Contribution of membrane-associated oscillators to biological timing at different timescales
(2024-01-09)
Environmental rhythms such as the daily light-dark cycle selected for endogenous clocks. These clocks predict regular environmental changes and provide the basis for well-timed adaptive homeostasis in physiology and behavior of organisms. Endogenous clocks are oscillators that are based on positive feedforward and negative feedback loops. They generate stable rhythms even under constant conditions. Since even weak interactions between oscillators allow for autonomous synchronization, coupling/synchronization of ...
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Philip Charles Brookes, 23 March 1951 to 28 September 2023
(2023-12-14)
Obituary to Philip Charles Brookes (1951-2023).