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Yeast gene KTI13 (alias DPH8) operates in the initiation step of diphthamide synthesis on elongation factor 2
(2023-08-08)
In yeast, Elongator-dependent tRNA modifications are regulated by the Kti11•Kti13 dimer and hijacked for cell killing by zymocin, a tRNase ribotoxin. Kti11 (alias Dph3) also controls modification of elongation factor 2 (EF2) with diphthamide, the target for lethal ADP-ribosylation by diphtheria toxin (DT). Diphthamide formation on EF2 involves four biosynthetic steps encoded by the DPH1-DPH7 network and an ill-defined KTI13 function. On further examining the latter gene in yeast, we found that kti13Δ null-mutants ...
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Anthropogenic and natural disturbances increase local genetic diversity in an early spring geophyte (Ficaria verna Huds)
(2023-12-26)
The tetraploid Ficaria verna is a common spring geophyte in central Europe and is considered invasive in the USA and Canada. It is considered an almost seed-sterile taxon, relying on vegetative reproduction by underground tubers and aerial bulbils. Recent studies have revealed high levels of population genetic diversity in F. verna, raising the question of how genetic diversity is maintained and which factors may be responsible for the observed patterns. Polymorphic nuclear microsatellite markers were established to ...
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Diversity of Trametes (Polyporales, Basidiomycota) in tropical Benin and description of new species Trametes parvispora
(2020-03-10)
Trametes is a globally distributed genus of white-rot polypores and well sampled in temperate and boreal areas. However, the diversity, taxonomy, and phylogenetic positions of Trametes spp. are poorly known in tropical Africa. This study aims at documenting the diversity of Trametes species in Benin (tropical Africa) and their phylogenetic positions with a focus on the T. elegans species complex. Therefore, we collected specimens of Trametes from different forest types across Benin. To infer phylogenetic relationships ...
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Soil N₂O flux and nitrification and denitrification gene responses to feed-induced differences in the composition of dairy cow faeces
(2021-05-17)
Faeces from cows with different milk yield and non-lactating cows were applied to soil to investigate whether soil N₂O efflux is related to feeding-induced differences in faecal microbiome and abundances of nitrification and denitrification genes. Fungal 18S-rRNA gene abundance was the highest in the faeces of the non-lactating group. The 18S-rRNA/ergosterol ratio showed a strong positive correlation with the 18S-rRNA/fungal glucosamine ratio. The milk-yield groups did not affect the gene abundances of bacterial 16S ...
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An Overview of the Use of Genotyping Techniques for Assessing Genetic Diversity in Local Farm Animal Breeds
(2021-07-06)
The number of local farm animal breeds is declining worldwide. However, these breeds have different degrees of genetic diversity. Measuring genetic diversity is important for the development of conservation strategies and, therefore, various genomic analysis techniques are available. The aim of the present work was to shed light on the use of these techniques in diversity studies of local breeds. In summary, a total of 133 worldwide studies that examined genetic diversity in local cattle, sheep, goat, chicken and pig ...
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Performance of field-scale lab vs in situ visible/near- and mid-infrared spectroscopy for estimation of soil properties
(2021-10-10)
Comparison of laboratory versus in situ visible/near- (visNIR) and mid-infrared (MIR) spectroscopy for prediction of various soil properties is required to demonstrate trade-offs between accuracy and efficiency. Field measurements were made on an arable field in Germany (silt loam Haplic Luvisol) using visNIR (ASD FieldSpec 3 Hi-Res) and MIR (Agilent Technologies 4300 Handheld FTIR) and material was collected for lab visNIR (Foss XDS Rapid Content Analyzer) and MIR (Bruker-TENSOR 27) measurements on dried and ground ...
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Mineralisation of distinct biogas digestate qualities directly after application to soil
(2020-11-02)
Biogas is an important energy source produced by the anaerobic fermentation of raw faecal slurries and plant residues. Separation of the total digestate increases the fertilizer quality of the liquid fraction and the carbon sequestration potential of the solid fraction. A 12-day incubation study was carried out to investigate the relationships between the chemical composition of different digestate qualities and the immediate response of soil microbial activity and biomass indices. The highest cumulative (Σ) CO2-C ...
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Combined leaching and plant uptake simulations of PFOA and PFOS under field conditions
(2020-08-31)
Per- and polyfluoroalkyl substances (PFASs) are used in industrial production and manufacturing but were repeatedly detected in agricultural soils and therefore in cash crops in recent years. Dissipation of perfluoroalkyl acids (PFAAs), a sub-group of PFASs, in the environment was rather attributed to the formation of non-extractable residues (NER) than to degradation or transformation. Currently, there are no models describing the fate of PFAAs in the soil-plant continuum under field conditions, which hampers an ...
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Effects of mucilage concentration at different water contents on mechanical stability and elasticity in a loamy and a sandy soil
(2021-10-26)
Mucilage released by plant roots affects hydrological and mechanical properties of the rhizosphere. The aim of this study was to disentangle the effects of the factors mucilage and soil moisture on a range of soil mechanical parameters in a sand and a loam. Both substrates were homogenised and filled into cylinders at bulk densities (ρb) of 1.26 and 1.47 g cm−³ for loam and sand, respectively. Chia seed (Salvia hispanica L.) mucilage concentrations of 0, 0.02, 0.2 and 2 g dry mucilage kg−¹ dry soil were tested at ...
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The effect of biodynamic preparations on growth and fruit quality of giant pumpkin (Cucurbita maxima D.)
(2021-11-25)
Background
Food quality of agricultural crops depends on environmental conditions, production system and cultivation method. A plant-based nutrition with food rich in vitamins, minerals and secondary plant compounds with antioxidative properties promotes human health. This investigation was inspired by an increasing global issue on how to improve product quality while using alternative preparations. The main aim of a 3-year study was to investigate the influence of fermented manure and silica products on yield and ...