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An updated world checklist of velvet worms (Onychophora) with notes on nomenclature and status of names
(2023-11-16)
More than a decade has passed since the publication of the only world checklist available for Onychophora. During this period, numerous nomenclatural acts and taxonomic changes have been suggested within the group and a wealth of novel data has been published on many taxa. Herein, the up-to-date taxonomic scenario within Onychophora is presented, with appraisal of name status. This checklist covers both extant (Peripatidae and Peripatopsidae) and fossil taxa, and each species is accompanied by information on synonyms, ...
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Soil respiration under different N fertilization and irrigation regimes in Bengaluru, S-India
(2023-09-15)
Rapid urbanization in many countries of the Global South has led to intensification of urban and peri-urban agriculture (UPA) whose effects on the soils’ physical, chemical, and microbial properties have been hardly studied. We therefore investigated the effects of different intensity levels, exemplified by three rates of mineral nitrogen (N) addition and irrigation on CO₂ emissions in typical crops during the wet (Kharif) and dry (Rabi) season on a Nitisol in Bengaluru, S-India. Respiration data were collected from ...
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DPH1 Gene Mutations Identify a Candidate SAM Pocket in Radical Enzyme Dph1 Dph2 for Diphthamide Synthesis on EF2
(2023-11-16)
In eukaryotes, the Dph1•Dph2 dimer is a non-canonical radical SAM enzyme. Using iron-sulfur (FeS) clusters, it cleaves the cosubstrate S-adenosyl-methionine (SAM) to form a 3-amino-3-carboxy-propyl (ACP) radical for the synthesis of diphthamide. The latter decorates a histidine residue on elongation factor 2 (EF2) conserved from archaea to yeast and humans and is important for accurate mRNA translation and protein synthesis. Guided by evidence from archaeal orthologues, we searched for a putative SAM-binding pocket ...
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Yeast gene KTI13 (alias DPH8) operates in the initiation step of diphthamide synthesis on elongation factor 2
(2023-08-08)
In yeast, Elongator-dependent tRNA modifications are regulated by the Kti11•Kti13 dimer and hijacked for cell killing by zymocin, a tRNase ribotoxin. Kti11 (alias Dph3) also controls modification of elongation factor 2 (EF2) with diphthamide, the target for lethal ADP-ribosylation by diphtheria toxin (DT). Diphthamide formation on EF2 involves four biosynthetic steps encoded by the DPH1-DPH7 network and an ill-defined KTI13 function. On further examining the latter gene in yeast, we found that kti13Δ null-mutants ...
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Didymella pinodella: An Important Pea Root Rot Pathogen in France to Watch Out For?
(2024-01-05)
Root rot pathogens restrict pea and wheat production globally. In the EU, pea and pea-based cereal mixtures are being promoted; however, root rot pathogen dynamics in such mixtures are poorly understood. Winter pea and wheat were grown either in pure stands or in mixtures in the field in western France, and the severity of root rot in pea, wheat, and their mixtures, as well as the key pathogens associated with these crops, were assessed. Disease severity was moderate in pea and low in wheat, with no effect of sowing ...
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Main soil microbial groups assessed by phospholipid fatty acid analysis of temperate alley agroforestry systems on crop- and grassland
(2024-01-12)
The phospholipid fatty acid (PLFA) composition of soils was analysed at three poplar-based silvo-arable systems and at one willow-based silvo-grassland alley agroforestry system in Central Germany. The objective was to analyse tree row effects on the PLFA composition of main fungal and main bacterial groups. The fungal groups were BAM (Basidiomycota + Ascomycota + Mucoromycota) and AMF (Arbuscular Mycorrhizal Fungi). The bacterial groups were Gram-negative, Firmicutes, and Actinobacteria. The total PLFA content varied ...
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Lipidome remodeling in response to nutrient replenishment requires the tRNA modifier Deg1/Pus3 in yeast
(2023-10-21)
In the yeast Saccharomyces cerevisiae, the absence of the pseudouridine synthase Pus3/Deg1, which modifies tRNA positions 38 and 39, results in increased lipid droplet (LD) content and translational defects. In addition, starvation-like transcriptome alterations and induced protein aggregation were observed. In this study, we show that the deg1 mutant increases specific misreading errors. This could lead to altered expression of the main regulators of neutral lipid synthesis which are the acetyl-CoA carboxylase (Acc1), ...
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Anthropogenic and natural disturbances increase local genetic diversity in an early spring geophyte (Ficaria verna Huds)
(2023-12-26)
The tetraploid Ficaria verna is a common spring geophyte in central Europe and is considered invasive in the USA and Canada. It is considered an almost seed-sterile taxon, relying on vegetative reproduction by underground tubers and aerial bulbils. Recent studies have revealed high levels of population genetic diversity in F. verna, raising the question of how genetic diversity is maintained and which factors may be responsible for the observed patterns. Polymorphic nuclear microsatellite markers were established to ...
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Why has animal science not led to improved farm animal health and welfare?
(2024-01-05)
To sustain the economic viability of a livestock farm in a global market, characterised by a price undercutting competition, farmers are forced to adapt to what the market demands. At the same time, they have to care for the functionality of the farm system as a whole and of the subsystems, such as the farm animals, so that they for their part they can contribute to an economic success. Now, that animal health and welfare (AHW) has become an increasingly important issue for citizens and consumers, not only the decision ...
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Contribution of membrane-associated oscillators to biological timing at different timescales
(2024-01-09)
Environmental rhythms such as the daily light-dark cycle selected for endogenous clocks. These clocks predict regular environmental changes and provide the basis for well-timed adaptive homeostasis in physiology and behavior of organisms. Endogenous clocks are oscillators that are based on positive feedforward and negative feedback loops. They generate stable rhythms even under constant conditions. Since even weak interactions between oscillators allow for autonomous synchronization, coupling/synchronization of ...